Superb insight and specificity for your testing needs
Real-time PCR testing for mouse, rat and other species.
- Mouse Opti-XXpress (DCS)
- Rat Opti-XXpress (DCS)
- EDx Mouse (EDT & SFSB)
- EDx Rats (EDT & SFSB)
- Other Mouse and Rat Panels
- Other Species
- Individual PCR Assays
Mouse Opti-XXpress
F - Feces | FS - Fur Swabs | DOS - Dry Oral Swabs
(Long: 5441204)
| Agent | Type | Sample Type | FELASA Quarterly | FELASA Annual | FELASA Quarterly SOPF | FELASA Annual SOPF |
|---|---|---|---|---|---|---|
| Mouse parvovirus (MPV1-5) | Viruses | F |
4
|
5
|
6
|
7
|
| Minute virus of mice (MVM) | Viruses | F |
4
|
5
|
6
|
7
|
| Mouse hepatitis virus (MHV) | Viruses | F |
4
|
5
|
6
|
7
|
| Mouse norovirus (MNV) | Viruses | F |
4
|
5
|
6
|
7
|
| Theiler's murine encephalomyelitis virus (TMEV) | Viruses | F |
4
|
5
|
6
|
7
|
| Mouse rotavirus (MRV/EDIM) | Viruses | F |
4
|
5
|
6
|
7
|
| Reovirus 3 (REO3) | Viruses | F |
5
|
7
|
||
| Lymphocytic choriomeningitis virus (LCMV) | Viruses | F |
5
|
7
|
||
| Ectromelia virus | Viruses | F |
5
|
7
|
||
| Mouse adenovirus 1 (MAV1) | Viruses | F |
5
|
7
|
||
| Mouse adenovirus 2 (MAV2) | Viruses | F |
5
|
7
|
||
| Sendai virus (SEND) | Viruses | DOS |
5
|
7
|
||
| Pneumonia virus of mice (PVM) | Viruses | DOS |
5
|
7
|
||
| Rodentibacter heylii/pneumotropicus (Pasteurella pneumotropica Biotype Heyl & Jawetz) | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Streptococcus β-hemolytic (Groups A,B,C,G) | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Corynebacterium kutscheri | Bacteria - Respiratory | DOS |
5
|
7
|
||
| Mycoplasma pulmonis | Bacteria - Respiratory | DOS |
5
|
7
|
||
| Streptococcus pneumoniae | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Streptobacillus moniliformis | Bacteria - Respiratory | DOS |
5
|
7
|
||
| Filobacterium rodentium (CAR bacillus) | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Bordetella bronchiseptica | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Staphylococcus aureus | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius | Bacteria - Enteric | F |
4
|
5
|
6
|
7
|
| Citrobacter rodentium | Bacteria - Enteric | F |
5
|
7
|
||
| Clostridium piliforme | Bacteria - Enteric | F |
5
|
7
|
||
| Salmonella spp. | Bacteria - Enteric | F |
5
|
7
|
||
| Klebsiella oxytoca | Bacteria - Enteric | F |
6
|
7
|
||
| Klebsiella pneumoniae | Bacteria - Enteric | F |
6
|
7
|
||
| Pseudomonas aeruginosa | Bacteria - Enteric | F |
6
|
7
|
||
| Proteus mirabilis | Bacteria - Enteric | F |
6
|
7
|
||
| Chilomastix spp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Cryptosporidium spp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Eimeria sp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Entamoeba muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Giardia muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Spironucleus muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Tritrichomonas muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata) | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.) | Parasites / Protozoa | FS |
4
|
5
|
6
|
7
|
Rat Opti-XXpress
F - Feces | FS - Fur Swabs | DOS - Dry Oral Swabs
(Long: 5441203)
| Agent | Type | Sample Type | FELASA Quarterly | FELASA Annual | FELASA Quarterly SOPF | FELASA Annual SOPF |
|---|---|---|---|---|---|---|
| Rat parvovirus (RPV) | Viruses | F |
4
|
5
|
6
|
7
|
| Rat minute virus (RMV) | Viruses | F |
4
|
5
|
6
|
7
|
| Kilham's rat virus (KRV) | Viruses | F |
4
|
5
|
6
|
7
|
| Toolan's H-1 virus (H-1) | Viruses | F |
4
|
5
|
6
|
7
|
| Rat theilovirus (RTV) | Viruses | F |
4
|
5
|
6
|
7
|
| Rat coronavirus/Sialodacryoadenitis virus (RCV/SDAV) | Viruses | DOS |
4
|
5
|
6
|
7
|
| Pneumonia virus of mice (PVM) | Viruses | DOS |
4
|
5
|
6
|
7
|
| Sendai virus (SEND) | Viruses | DOS |
5
|
7
|
||
| Reovirus 3 (REO3) | Viruses | F |
5
|
7
|
||
| Hantavirus (Hantaan) | Viruses | F |
5
|
7
|
||
| Seoul virus (SEOUL) | Viruses | F |
5
|
7
|
||
| Mouse adenovirus 1 (MAV1) | Viruses | F |
5
|
7
|
||
| Mouse adenovirus 2 (MAV2) | Viruses | F |
5
|
7
|
||
| Pneumocystis carinii | Fungi | DOS |
5
|
7
|
||
| Rodentibacter heylii/pneumotropicus (Pasteurella pneumotropica Bioytype Heyl & Jawetz) | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Streptococcus β-hemolytic (Groups A,B,C,G) | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Corynebacterium kutscheri | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Mycoplasma pulmonis | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Streptococcus pneumoniae | Bacteria - Respiratory | DOS |
4
|
5
|
6
|
7
|
| Streptobacillus moniliformis | Bacteria - Respiratory | DOS |
5
|
7
|
||
| Bordetella bronchiseptica | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Filobacterium rodentium (CAR bacillus) | Bacteria - Respiratory | DOS |
5
|
7
|
||
| Staphylococcus aureus | Bacteria - Respiratory | DOS |
6
|
7
|
||
| Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius | Bacteria - Enteric | F |
4
|
5
|
6
|
7
|
| Clostridium piliforme | Bacteria - Enteric | F |
4
|
5
|
6
|
7
|
| Salmonella spp. | Bacteria - Enteric | F |
5
|
7
|
||
| Klebsiella oxytoca | Bacteria - Enteric | F |
6
|
7
|
||
| Klebsiella pneumoniae | Bacteria - Enteric | F |
6
|
7
|
||
| Pseudomonas aeruginosa | Bacteria - Enteric | F |
6
|
7
|
||
| Proteus mirabilis | Bacteria - Enteric | F |
6
|
7
|
||
| Chilomastix spp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Cryptosporidium spp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Eimeria sp. | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Entamoeba muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Giardia muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Spironucleus muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Tritrichomonas muris | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata) | Parasites / Protozoa | F |
4
|
5
|
6
|
7
|
| Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.) | Parasites / Protozoa | FS |
4
|
5
|
6
|
7
|
Mouse Environmental Diagnostic Profiles
(Long: 5441207)
| Agent | Type | Sample Type | FELASA Quarterly | FELASA Annual | FELASA Quarterly SOPF | FELASA Annual SOPF |
|---|---|---|---|---|---|---|
| Mouse parvovirus (MPV1-5) | Viruses | E |
4
|
5
|
6
|
7
|
| Minute virus of mice (MVM) | Viruses | E |
4
|
5
|
6
|
7
|
| Mouse hepatitis virus (MHV) | Viruses | E |
4
|
5
|
6
|
7
|
| Mouse norovirus (MNV) | Viruses | E |
4
|
5
|
6
|
7
|
| Theiler's murine encephalomyelitis virus (TMEV) | Viruses | E |
4
|
5
|
6
|
7
|
| Mouse rotavirus (MRV/EDIM) | Viruses | E |
4
|
5
|
6
|
7
|
| Reovirus 3 (REO3) | Viruses | E |
5
|
7
|
||
| Lymphocytic choriomeningitis virus (LCMV) | Viruses | E |
5
|
7
|
||
| Ectromelia virus | Viruses | E |
5
|
7
|
||
| Mouse adenovirus 1 (MAV1) | Viruses | E |
5
|
7
|
||
| Mouse adenovirus 2 (MAV2) | Viruses | E |
5
|
7
|
||
| Sendai virus (SEND) | Viruses | E |
5
|
7
|
||
| Pneumonia virus of mice (PVM) | Viruses | E |
5
|
7
|
||
| Rodentibacter heylii/pneumotropicus (Pasteurella pneumotropica Biotype Heyl & Jawetz) | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Streptococcus β-hemolytic (Groups A,B,C,G) | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Corynebacterium kutscheri | Bacteria - Respiratory | E |
5
|
7
|
||
| Mycoplasma pulmonis | Bacteria - Respiratory | E |
5
|
7
|
||
| Streptococcus pneumoniae | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Streptobacillus moniliformis | Bacteria - Respiratory | E |
5
|
7
|
||
| Filobacterium rodentium (CAR bacillus) | Bacteria - Respiratory | E |
6
|
7
|
||
| Bordetella bronchiseptica | Bacteria - Respiratory | E |
6
|
7
|
||
| Staphylococcus aureus | Bacteria - Respiratory | E |
6
|
7
|
||
| Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius | Bacteria - Enteric | E |
4
|
5
|
6
|
7
|
| Citrobacter rodentium | Bacteria - Enteric | E |
5
|
7
|
||
| Clostridium piliforme | Bacteria - Enteric | E |
5
|
7
|
||
| Salmonella spp. | Bacteria - Enteric | E |
5
|
7
|
||
| Klebsiella oxytoca | Bacteria - Enteric | E |
6
|
7
|
||
| Klebsiella pneumoniae | Bacteria - Enteric | E |
6
|
7
|
||
| Pseudomonas aeruginosa | Bacteria - Enteric | E |
6
|
7
|
||
| Proteus mirabilis | Bacteria - Enteric | E |
6
|
7
|
||
| Chilomastix spp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Cryptosporidium spp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Eimeria sp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Entamoeba muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Giardia muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Spironucleus muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Tritrichomonas muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata) | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.) | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
Rat Environmental Diagnostic Profiles
(Long: 5441205)
| Agent | Type | Sample Type | FELASA Quarterly | FELASA Annual | FELASA Quarterly SOPF | FELASA Annual SOPF |
|---|---|---|---|---|---|---|
| Rat parvovirus (RPV) | Viruses | E |
4
|
5
|
6
|
7
|
| Rat minute virus (RMV) | Viruses | E |
4
|
5
|
6
|
7
|
| Kilham's rat virus (KRV) | Viruses | E |
4
|
5
|
6
|
7
|
| Toolan's H-1 virus (H-1) | Viruses | E |
4
|
5
|
6
|
7
|
| Rat theilovirus (RTV) | Viruses | E |
4
|
5
|
6
|
7
|
| Rat coronavirus/Sialodacryoadenitis virus (RCV/SDAV) | Viruses | E |
4
|
5
|
6
|
7
|
| Pneumonia virus of mice (PVM) | Viruses | E |
4
|
5
|
6
|
7
|
| Sendai virus (SEND) | Viruses | E |
5
|
7
|
||
| Reovirus 3 (REO3) | Viruses | E |
5
|
7
|
||
| Hantavirus (Hantaan) | Viruses | E |
5
|
7
|
||
| Seoul virus (SEOUL) | Viruses | E |
5
|
7
|
||
| Mouse adenovirus 1 (MAV1) | Viruses | E |
5
|
7
|
||
| Mouse adenovirus 2 (MAV2) | Viruses | E |
5
|
7
|
||
| Pneumocystis carinii | Fungi | E |
5
|
7
|
||
| Rodentibacter heylii/pneumotropicus (Pasteurella pnumotropica Biotype Heyl & Jawetz) | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Streptococcus β-hemolytic (Groups A,B,C,G) | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Corynebacterium kutscheri | Bacteria - Respiratory | E |
6
|
7
|
||
| Mycoplasma pulmonis | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Streptococcus pneumoniae | Bacteria - Respiratory | E |
4
|
5
|
6
|
7
|
| Streptobacillus moniliformis | Bacteria - Respiratory | E |
5
|
7
|
||
| Bordetella bronchiseptica | Bacteria - Respiratory | E |
6
|
7
|
||
| Filobacterium rodentium (CAR bacillus) | Bacteria - Respiratory | E |
5
|
7
|
||
| Staphylococcus aureus | Bacteria - Respiratory | E |
6
|
7
|
||
| Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius | Bacteria - Enteric | E |
4
|
5
|
6
|
7
|
| Clostridium piliforme | Bacteria - Enteric | E |
4
|
5
|
6
|
7
|
| Salmonella spp. | Bacteria - Enteric | E |
5
|
7
|
||
| Klebsiella oxytoca | Bacteria - Enteric | E |
6
|
7
|
||
| Klebsiella pneumoniae | Bacteria - Enteric | E |
6
|
7
|
||
| Pseudomonas aeruginosa | Bacteria - Enteric | E |
6
|
7
|
||
| Proteus mirabilis | Bacteria - Enteric | E |
6
|
7
|
||
| Chilomastix spp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Cryptosporidium spp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Eimeria sp. | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Entamoeba muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Giardia muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Spironucleus muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Tritrichomonas muris | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata) | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
| Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.) | Parasites / Protozoa | E |
4
|
5
|
6
|
7
|
Mouse and Rat
F - Feces | DOS - Dry Oral Swabs | FS - Fur Swab | E - Environmental
(Long: 5452616)
| Agent | Sample Type |
|---|---|
|
Parvovirus Mouse PCR MPV 1-5, MVM |
F or E |
|
Fecal A Mouse PCR MPV 1-5, MVM, MHV, MNV, Helicobacter spp., Pinworms |
F |
|
Fecal B Mouse PCR MPV 1-5, MVM, MHV, MNV, TMEV, EDIM, Helicobacter spp., Pinworms |
F |
|
Fecal C Mouse PCR MPV 1-5, MVM, MHV, MNV, TMEV, EDIM, Helicobacter spp., Pinworms, Citrobacter rodentium, Clostridium piliforme, Salmonella enterica, Klebsiella oxytoca, Klebsiella pneumoniae, Pseudomonas aeruginosa, Entamoeba muris, Giardia muris, Spironucleus muris, Tritrichomonas muris, Chilomastix spp. |
F |
|
Parvovirus Rat PCR RPV, RMV, KRV, H-1 |
F or E |
|
Fecal Rat PCR RPV, RMV, KRV, H-1, RTV, Helicobacter spp., Pinworms |
F |
|
Helicobacter PCR Helicobacter spp., H.bilis, H.hepaticus, H.rodentium, H.typhlonius, H.ganmani, H.mastomyrinus |
F or E |
|
Pinworm / Fur Mite PCR Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera, Myocoptes, Myobia and Radfordia spp. |
F or E |
|
Pinworm / Fur Mite / Helicobacter spp. PCR Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera, Myocoptes, Myobia and Radfordia spp., Helicobacter spp., H.bilis, H.hepaticus, H.rodentium, H.typhlonius, H.ganmani, H.mastomyrinus |
F or E |
|
Protozoa PCR Entamoeba muris, Giardia muris, Spironucleus muris, Tritrichomonas muris, Chilomastix spp., Cryptosporidium spp., Eimeria spp. |
F or E |
|
Skin PCR Fur mites, Dermatophytes, Demodex musculi, Ornithonyssus spp., Staphylococcus aureus, Staphylococcus xylosus, Corynebacterium bovis, Corynebacterium spp. (HAC2) |
PS |
|
Dermatophytes PCR Microsporum spp., Trichophyton spp. |
Skin Brush |
|
Opportunistic Bacteria Mouse PCR Klebsiella oxytoca, Klebsiella pneumoniae, Pseudomonas aeruginosa, Proteus mirabilis, Staphylococcus aureus, Bordetella bronchiseptica, Filobacterium rodentium (CAR bacillus) |
F, DOS or E |
|
Opportunistic Bacteria Rat PCR Klebsiella oxytoca, Klebsiella pneumoniae, Pseudomonas aeruginosa, Proteus mirabilis, Staphylococcus aureus, Bordetella bronchiseptica, Corynebacterium kutscheri |
F, DOS or E |
Other Species Testing
F - Feces | DOS - Dry Oral Swabs | FS - Fur Swab | E - Environmental
(Long: 5392542)
| Agent | Sample Type(s) |
|---|---|
|
Opportunistic Bacteria Guinea Pig / Hamster PCR Klebsiella oxytoca, Klebsiella pneumoniae, Proteus mirabilis, Pseudomonas aeruginosa, Staphylococcus aureus |
F, DOS or F |
|
Acute Disease Guinea Pig PCR GPAdV, Bordetella bronchiseptic, Salmonella sp., β-hemolytic Streptococci Group C |
F, DOS |
|
Diarrhea Hamster PCR Clostridium perfringens (Alpha Toxin & Enterotoxin), Clostridium difficile (Toxin A & Toxin B), Helicobacter spp. (H. bilis & H. hepaticus), Salmonella sp., Lawsonia intracellularis, Campylobacter coli/jejuni., Cryptosprodium spp. |
F |
|
Respiratory Hamster PCR Rodentibacter heylii/pneumotropicus (Pasteurella pneumotropica Biotype Heyl and Jawetz), Streptococcus pneumoniae, β-hemolytics Streptococci Group B, Mycoplasma pulmonis, Bordatella bronchiseptica, , Sendai virus. |
DOS or F |
Individual PCR Assays
(Long: 5392543)
| Agent | Type | Sample Type | Species |
|---|---|---|---|
| Boone cardiovirus (BCV) | Virus | Feces, environmental | Rat |
| Ectromelia virus (mouse poxvirus) | Virus | Feces, environmental, skin lesion | Mouse |
| Guinea pig adenovirus (GAV) | Virus | Feces, environmental, oral swab, lung | Guinea Pig |
| Guinea pig cytomegalovirus (GPCMV) | Virus | Feces, spleen, salivary gland | Guinea Pig |
| Hamster parvovirus (HaPV) | Virus | Feces, mesenteric lymph nodes | Hamster |
| Hamster polyomavirus | Virus | Feces, environmental, lesioned organs | Hamster |
| Hantaan virus | Virus | Feces, environmental, kidney | Mouse, Rat, Guinea Pig, Hamster |
| K virus (Mouse pneumotropic virus) | Virus | Feces, environmental, mesenteric lymph nodes | Mouse |
| Kilham’s rat virus (KRV) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Rat |
| Lactate dehydrogenase-elevating virus (LDEV) | Virus | Serum, spleen | Mouse |
| Lymphocytic choriomeningitis virus (LCMV) | Virus | Feces, environmental, kidney | Mouse |
| Minute virus of mice (MMV) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Mouse |
| Mouse adenovirus 1 (MAV1) | Virus | Feces, environmental, mesenteric lymph nodes | Mouse |
| Mouse adenovirus 2 (MAV2) | Virus | Feces, environmental, intestine | Mouse |
| Mouse cytomegalovirus 1 (mCMV1) | Virus | Feces, environmental, spleen, salivary gland | Mouse |
| Mouse cytomegalovirus 2 (mCMV2) | Virus | Feces, environmental, spleen, salivary gland | Mouse |
| Mouse hepatitis virus (MHV) | Virus | Feces, environmental, mesenteric lymph nodes | Mouse |
| Mouse Kidney Parvovirus (MKPV) | Virus | Feces, environmental, kidney | Mouse |
| Mouse parvovirus (MPV) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Mouse |
| Mouse rotavirus (EDIM) | Virus | Feces, environmental | Mouse |
| Mouse thymic virus (MTV) | Virus | Feces, environmental, oral swab, salivary gland | Mouse |
| Murine astrovirus 1 (MuAstV1) | Virus | Feces, environmental | Mouse |
| Murine norovirus (MNV) | Virus | Feces, environmental | Mouse |
| Murine polyomavirus | Virus | Feces, environmental, skin | Mouse |
| Pneumonia virus of mice (PVM) | Virus | Feces, environmental, oral swab, lung | Mouse |
| Rat coronavirus (RCV)/ Sialodacryoadenitis virus (SDAV) | Virus | Feces, environmental, oral swab, Harderian gland | Rat |
| Rat cytomegalovirus1 (rCMV1) | Virus | Feces, environmental, oral swab, salivary gland | Rat |
| Rat cytomegalovirus2 (rCMV2) | Virus | Feces, environmental, oral swab, salivary gland | Rat |
| Rat minute virus (RMV) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Rat |
| Rat parvovirus (RPV) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Rat |
| Rat polyomavirus 2 (RPyV2) | Virus | Feces, environmental, oral swab | Rat |
| Rat rotavirus (IDIR) | Virus | Feces, environmental | Rat |
| Rat theilovirus (RTV) | Virus | Feces, environmental, intestine | Rat |
| Respiratory enteric orphan virus 1, 2 and 3 (REO1, 2 and 3) | Virus | Feces, environmental, intestine | Mouse, Rat, Guinea Pig, Hamster |
| Sendai virus (SEND) | Virus | Feces, environmental, oral swab, lung | Mouse, Rat, Guinea Pig, Hamster |
| Seoul virus | Virus | Feces, environmental, kidney | Mouse†, Rat |
| Sin Nombre virus | Virus | Feces, environmental, kidney | Mouse |
| Theiler’s murine encephalomyelitis virus (TMEV) | Virus | Feces, environmental | Mouse |
| Toolan’s H-1 virus (H-1) | Virus | Feces, environmental, mesenteric lymph nodes, spleen | Rat |
| Bordetella bronchiseptica | Bacteria | Feces, environmental, oral swab, trachea | Mouse, Guinea Pig, Rat, Rabbit |
| Bordetella hinzii; Bordetella pseudohinzii | Bacteria | Feces, environmental, oral swab, trachea | Mouse |
| Burkholderia gladioli | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Citrobacter rodentium | Bacteria | Feces, environmental, colon | Mouse, Rabbit |
| Clostridium piliforme (Tyzzer’s disease) | Bacteria | Feces, environmental | Mouse, Rat, Rabbit |
| Corynebacterium bovis | Bacteria | Feces, environmental, fur swab | Mouse, Rat |
| Corynebacterium spp. (HAC2) | Bacteria | Feces, environmental, fur swab | Mouse |
| Corynebacterium kutscheri | Bacteria | Feces, environmental, oral swab | Mouse, Hamster, Rat |
| Cilia-associated respiratory bacillus (CARB) / Filobacterium rodentium | Bacteria | Feces, environmental, oral swab, trachea | Mouse, Rat, Rabbit |
| Helicobacter spp. | Bacteria | Feces, environmental | Mouse, Guinea Pig, Rabbit, Rat |
| Helicobacter bilis | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Helicobacter ganmani | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Helicobacter hepaticus | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Helicobacter mastomyrinus | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Helicobacter rodentium | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Helicobacter typhlonius | Bacteria | Feces, environmental | Mouse, Rabbit, Rat |
| Klebsiella oxytoca | Bacteria | Feces, environmental | Mouse, Rat |
| Klebsiella pneumoniae | Bacteria | Feces, environmental | Mouse, Rat |
| Lawsonia intracellularis | Bacteria | Feces, environmental | Mouse, Guinea Pig, Hamster, Rat |
| Leptospira spp. | Bacteria | Feces, environmental | Mouse, Rat |
| Mycoplasma pulmonis | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Pasteurella multocida | Bacteria | Feces, environmental, oral swab | Rat |
| Proteus mirabilis | Bacteria | Feces, environmental | Mouse, Guinea Pig, Hamster, Rat |
| Pseudomonas aeruginosa | Bacteria | Feces, environmental | Mouse, Rat |
| Pasteurella pneumotropica Heyl / Rodentibacter heylii | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Pasteurella pneumotropica Jawetz / Rodentibacter pneumotropicus | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Rodentibacter ratti | Bacteria | Feces, environmental, oral swab | Rat |
| Salmonella enterica | Bacteria | Feces, environmental | Mouse, Guinea Pig, Hamster, Rabbit, Rat |
| Segmented filamentous bacterium | Bacteria | Feces, environmental | Mouse |
| Staphylococcus aureus | Bacteria | Feces, environmental, oral swab, fur swab/skin swab | Mouse, Rat |
| Staphylococcus xylosus | Bacteria | Feces, environmental, oral swab, fur swab/skin swab | Mouse, Rat |
| Streptobacillus moniliformis | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus, β-hemolytic | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus pyogenes (Group A) | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus agalactiae (Group B) | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus equi subsp. zooepidemicus (Group C) | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus canis (Group G) | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Streptococcus pneumoniae | Bacteria | Feces, environmental, oral swab | Mouse, Rat |
| Treponema paraluis-cuniculi | Bacteria | Genital swab | Rabbit |
| Encephalitozoon cuniculi | Fungi | Feces, kidney | Mouse, Guinea Pig, Hamster, Rabbit, Rat |
| Pneumocystis spp. | Fungi | Feces, environmental, oral swab, lung | Mouse, Rat |
| Aspiculuris tetraptera | Endoparasites | Feces, environmental | Mouse, Rat |
| Chilomastix spp. | Endoparasites | Feces, environmental | Mouse, Rat |
| Cryptosporidium spp. | Endoparasites | Feces, environmental | Mouse, Rat |
| Eimeria spp. | Endoparasites | Feces, environmental | Mouse, Rat, Rabbit |
| Entamoeba muris | Endoparasites | Feces, environmental | Mouse, Rat |
| Giardia muris | Endoparasites | Feces, environmental | Mouse, Rat |
| Hymenolepis diminuta | Endoparasites | Feces, environmental | Mouse, Rat |
| Rodentolepis nana | Endoparasites | Feces, environmental | Mouse, Rat |
| Spironucleus muris | Endoparasites | Feces, environmental | Mouse, Rat |
| Syphacia muris | Endoparasites | Feces, environmental | Mouse, Rat |
| Syphacia obvelata | Endoparasites | Feces, environmental | Mouse, Rat |
| Tritrichomonas muris | Endoparasites | Feces, environmental | Mouse, Rat |
| Demodex musculi | Ectoparasites | Pelt swab, environmental, feces | Mouse |
| Myocoptes musculinus | Ectoparasites | Pelt swab, environmental, feces | Mouse |
| Ornithonyssus spp. | Ectoparasites | Pelt swab, environmental, feces | Mouse, Rat |
| Radfordia affinis/Radfordia ensifera/Myobia musculi | Ectoparasites | Pelt swab, environmental, feces | Mouse, Rat |