Real-time PCR Testing Profiles

Real-time PCR testing for mouse, rat and other species.

DCS (direct colony sampling), SFSB (sentinel free soiled bedding) and EDT (exhaust dust testing)

Mouse Environmental Diagnostic Profiles

E - Environmental Sample

(Long: 105794426)
3R EDx Quarterly 3R EDx Annual 3R EDx Quarterly SOPF 3R EDx Annual SOPF
Test Code

21-00196

21-00198 21-00242 21-00197
Sample Type E

E

E E
Mouse parvovirus (MPV1-5)
Minute virus of mice (MVM)
Mouse hepatitis virus (MHV)
Mouse norovirus (MNV)
Theiler's murine encephalomyelitis virus (TMEV)
Mouse rotavirus (MRV/EDIM)
Reovirus 3 (REO3)
Lymphocytic choriomeningitis virus (LCMV)
Ectromelia virus (ECTRO)
Mouse adenovirus 1 (MAV1)
Mouse adenovirus 2 (MAV2)
Sendai virus (SEND)
Pneumonia virus of mice (PVM)
Rodentibacter heylii/pneumotropicus
Streptococcus β-hemolytic (Groups A,B,C,G)
Corynebacterium kutscheri
Mycoplasma pulmonis
Streptococcus pneumoniae
Streptobacillus moniliformis
Filobacterium rodentium
Bordetella bronchiseptica
Staphylococcus aureus
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius
Citrobacter rodentium
Clostridium piliforme
Salmonella spp.
Klebsiella oxytoca
Klebsiella pneumoniae
Pseudomonas aeruginosa
Proteus mirabilis
Chilomastix spp.
Cryptosporidium spp.
Eimeria sp.
Entamoeba muris
Giardia muris
Spironucleus muris
Tritrichomonas muris
Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata)
Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.)

Rat Environmental Diagnostic Profiles

E - Environmental Sample

(Long: 105797678)
3R EDx Quarterly 3R EDx Annual 3R EDx Quarterly SOPF 3R EDx Annual SOPF
Test Code 21-00199 21-00200 21-00243 21-00201
Sample Type E

E

E E
Rat parvovirus (RPV)
Rat minute virus (RMV)
Kilham's rat virus (KRV)
Toolan's H-1 virus (H-1)
Rat theilovirus (RTV)
Rat coronavirus/Sialodacryoadenitis virus (RCV/SDAV)
Pneumonia virus of mice (PVM)
Sendai virus (SEND)
Reovirus 3 (REO3)
Hantavirus (HANT)
Seoul virus (SEOV)
Mouse adenovirus 1 (MAV1)
Mouse adenovirus 2 (MAV2)
Pneumocystis carinii
Rodentibacter heylii/pneumotropicus
Streptococcus β-hemolytic (Groups A,B,C,G)
Corynebacterium kutscheri
Mycoplasma pulmonis
Streptococcus pneumoniae
Streptobacillus moniliformis
Bordetella bronchiseptica
Filobacterium rodentium
Staphylococcus aureus
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus,
H.mastomyrinus, H.rodentium, H.typhlonius
Clostridium piliforme
Salmonella spp.
Klebsiella oxytoca
Klebsiella pneumoniae
Pseudomonas aeruginosa
Proteus mirabilis
Chilomastix spp.
Cryptosporidium spp.
Eimeria sp.
Entamoeba muris
Giardia muris
Spironucleus muris
Tritrichomonas muris
Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata)
Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.)

Mouse Quarantine

F - Feces | FS - Fur Swabs | DOS - Dry Oral Swabs

 

(Long: 105800537)
3R Quarantine Quarterly 3R Quarantine Annual 3R Quarantine Quarterly SOPF 3R Quarantine Annual SOPF
Test Code 21-00143 21-00287 21-00297 21-00145
Sample Type F, DOS, FS F, DOS, FS F, DOS, FS F, DOS, FS
Mouse parvovirus (MPV1-5)
Minute virus of mice (MVM)
Mouse hepatitis virus (MHV)
Mouse norovirus (MNV)
Theiler's murine encephalomyelitis virus (TMEV)
Mouse rotavirus (MRV/EDIM)
Reovirus 3 (REO3)
Lymphocytic choriomeningitis virus (LCMV)
Ectromelia virus (ECTRO)
Mouse adenovirus 1 (MAV1)
Mouse adenovirus 2 (MAV2)
Sendai virus (SEND)
Pneumonia virus of mice (PVM)
Rodentibacter heylii/pneumotropicus
Streptococcus β-hemolytic (Groups A,B,C,G)
Corynebacterium kutscheri
Mycoplasma pulmonis
Streptococcus pneumoniae
Streptobacillus moniliformis
Filobacterium rodentium
Bordetella bronchiseptica
Staphylococcus aureus
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius
Citrobacter rodentium
Clostridium piliforme
Salmonella spp.
Klebsiella oxytoca
Klebsiella pneumoniae
Pseudomonas aeruginosa
Proteus mirabilis
Chilomastix spp.
Cryptosporidium spp.
Eimeria sp.
Entamoeba muris
Giardia muris
Spironucleus muris
Tritrichomonas muris
Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata)
Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.)

Rat Quarantine

F - Feces | FS - Fur Swabs | DOS - Dry Oral Swabs

 

(Long: 105797757)
3R Quarantine Quarterly 3R Quarantine Annual 3R Quarantine Quarterly SOPF 3R Quarantine Annual SOPF
Test Code 21-00146 21-00147 21-00299 21-00148
Sample Type F, DOS, FS F, DOS, FS F, DOS, FS F, DOS, FS
Rat parvovirus (RPV)
Rat minute virus (RMV)
Kilham's rat virus (KRV)
Toolan's H-1 virus (H-1)
Rat theilovirus (RTV)
Rat coronavirus/Sialodacryoadenitis virus (RCV/SDAV)
Pneumonia virus of mice (PVM)
Sendai virus (SEND)
Reovirus 3 (REO3)
Hantavirus (Hantaan)
Seoul virus (SEOUL)
Mouse adenovirus 1 (MAV1)
Mouse adenovirus 2 (MAV2)
Pneumocystis carinii
Rodentibacter heylii/pneumotropicus
Streptococcus β-hemolytic (Groups A,B,C,G)
Corynebacterium kutscheri
Mycoplasma pulmonis
Streptococcus pneumoniae
Streptobacillus moniliformis
Bordetella bronchiseptica
Filobacterium rodentium
Staphylococcus aureus
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus, H.rodentium, H.typhlonius
Clostridium piliforme
Salmonella spp.
Klebsiella oxytoca
Klebsiella pneumoniae
Pseudomonas aeruginosa
Proteus mirabilis
Chilomastix spp.
Cryptosporidium spp.
Eimeria sp.
Entamoeba muris
Giardia muris
Spironucleus muris
Tritrichomonas muris
Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata)
Fur Mites (Myobia spp., Myocoptes spp., Radfordia spp.)

Mouse and Rat

F - Feces | DOS - Dry Oral Swabs | FS - Fur Swab | E - Environmental

 

(Long: 104519732)
Sample Type Test Code

Parvovirus Mouse PCR

MPV 1-5, MVM

F or E 21-00190

Parvovirus Rat PCR

RPV, RMV, KRV, H-1

F or E 21-00191
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Panel F, DOS Call

Protozoa PCR

Entamoeba muris, Giardia muris, Spironucleus muris, Tritrichomonas muris,

Chilomastix spp., Cryptosporidium spp., Eimeria spp.

F or E 21-00264

Skin PCR

Fur mites, Dermatophytes, Demodex musculi, Ornithonyssus spp., Staphylococcus aureus,

Staphylococcus xylosus, Corynebacterium bovis, Corynebacterium spp. (HAC2)

PS 21-00270

Dermatophytes PCR

Microsporum spp., Trichophyton spp.

Skin Brush 21-00175

Opportunistic Bacteria Mouse PCR

Klebsiella oxytoca, Klebsiella pneumoniae, Pseudomonas aeruginosa, Proteus mirabilis,

Staphylococcus aureus, Bordetella bronchiseptica, Filobacterium rodentium

F, DOS or E 21-00343

Opportunistic Bacteria Rat PCR

Klebsiella oxytoca, Klebsiella pneumoniae, Pseudomonas aeruginosa, Proteus mirabilis,

Staphylococcus aureus, Bordetella bronchiseptica, Corynebacterium kutscheri

F, DOS or E 21-00344

Other Species Testing

F - Feces | DOS - Dry Oral Swabs | FS - Fur Swab | E - Environmental

 

(Long: 103196681)
Sample Type Test Code

Opportunistic Bacteria Guinea Pig PCR

Klebsiella oxytoca, Klebsiella pneumoniae, Proteus mirabilis, Pseudomonas aeruginosa, Staphylococcus aureus

F, DOS or F 21-00336

Opportunistic Bacteria Hamster PCR

Klebsiella oxytoca, Klebsiella pneumoniae, Proteus mirabilis, Pseudomonas aeruginosa, Staphylococcus aureus

F, DOS or F 21-00330

Acute Disease Guinea Pig PCR

GPAdV, Bordetella bronchiseptic, Salmonella sp., β-hemolytic Streptococci Group C

F, DOS 21-00337

Diarrhea Hamster PCR

Clostridium perfringens (Alpha Toxin & Enterotoxin), Clostridium difficile (Toxin A & Toxin B), Helicobacter spp. (H. bilis & H. hepaticus),

Salmonella sp., Lawsonia intracellularis, Campylobacter coli/jejuni., Cryptosprodium spp.

F 21-00331

Respiratory Hamster PCR

Rodentibacter heylii/pneumotropicus, Streptococcus pneumoniae,

β-hemolytics Streptococci Group B, Mycoplasma pulmonis, Bordatella bronchiseptica, , Sendai virus.

DOS or F 21-00332

Individual PCR Assays

(Long: 103216046)
Sample Type Species Test Code
Boone cardiovirus (BCV) Feces, environmental Rat 20-00148
Bordetella bronchiseptica Feces, environmental, oral swab, trachea Mouse, Guinea Pig, Rat, Rabbit, Hamster, Chinchilla 20-00120
Bordetella hinzii / pseudohinzii Feces, environmental, oral swab, trachea Mouse, Chinchilla 20-00176
Burkholderia gladioli Feces, environmental, oral swab Mouse, Rat 20-00456
Campylobacter coli Feces, Environmental Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00116
Campylobacter jejeuni Feces, Environmental Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00091
Chilomastix spp. Feces, environmental Mouse, Rat 20-00341
Chlamydia muridarum Feces, environmental Mouse 20-00470
Cilia-associated respiratory bacillus (CARB) Feces, environmental, oral swab, trachea Rabbit ?
Citrobacter rodentium Feces, environmental, colon Mouse, Rabbit 20-00005
Clostridium difficile Toxin A Feces, environmental Rabbit 20-00098
Clostridium difficile Toxin B Feces, environmental Rabbit 20-00101
Clostridium perfrigens alpha toxin Feces, environmental Chinchilla 20-00107
Clostridium perfrigens enterotoxin Feces, environmental Chinchilla 20-00340
Clostridium piliforme (Tyzzer’s disease) Feces, environmental Mouse, Rat, Rabbit 20-00007
Corynebacterium bovis Feces, environmental, fur swab Mouse, Rat 20-00096
Corynebacterium kutscheri Feces, environmental, oral swab Mouse, Hamster, Rat 20-00042
Corynebacterium spp. (HAC2) Feces, environmental, ?? fur swab ?? Mouse 20-00332
Cryptosporidium muris Feces, environmental Mouse 20-00474
Cryptosporidium parvum/tyzzeri Feces, environmental Mouse 20-00475
Cryptosporidium spp. Feces, environmental Mouse, Rat, Guinea Pig, Hamster, Rabbit, Chinchilla 20-00350
Demodex musculi Pelt swab, environmental, feces Mouse, Rat 20-00318
Dermatophytes (Microsporum sp., Trichophyton sp.) Pelt swab, environmental, feces Mouse, Rat, Guinea Pid, Hamster, Rabbit, Chinchilla 20-00314
Ectromelia virus (ECTRO) Feces, environmental, skin lesion Mouse 20-00004
Eimeria spp. Feces, environmental Mouse, Rat, Rabbit, Chinchilla 20-00409
Encephalitozoon cuniculi Feces, kidney Mouse, Guinea Pig, Hamster, Rabbit, Rat 20-00051
Entamoeba muris Feces, environmental Mouse, Rat, Hamster 20-00142
Filobacterium rodentium Feces, Environmental, oral swab, trachea Mouse, Rat, Hamster 20-00006
Fure mites (Myocoptes, Myoba, Radfordia) Feces, environmental, pelt swab Mouse, Rat, Chinchilla 20-00124
Giardia muris Feces, environmental Mouse, Rat, Hamster 20-00090
Giardia spp. Feces, environmental Chinchilla, Rabbit 20-00354
Guinea pig adenovirus (GPAV) Feces, environmental, oral swab, lung Guinea Pig 20-00013
Guinea pig cytomegalovirus (GPCMV) Feces, spleen, salivary gland Guinea Pig 20-00015
Hamster parvovirus (HaPV) Feces, mesenteric lymph nodes Hamster 20-00012
Hamster polyomavirus (HaPyV) Feces, environmental, lesioned organs Hamster 20-00186
Hantaan virus (HANT) Feces, environmental, kidney Mouse, Rat, Guinea Pig, Hamster 20-00011
Helicobacter bilis Feces, environmental Mouse, Rat, Guinea Pig, Hamster 21-00001
Helicobacter ganmani Feces, environmental Mouse, Rat 21-00001
Helicobacter hepaticus Feces, environmental Mouse, Rat, Guinea Pig, Hamster 21-00001
Helicobacter mastomyrinus Feces, environmental Mouse, Rat 21-00001
Helicobacter rodentium Feces, environmental Mouse, Rat 21-00001
Helicobacter spp. Feces, environmental Mouse, Guinea Pig, hamster, abbit, Rat 21-00001
Helicobacter typhlonius Feces, environmental Mouse, Rat 21-00001
Hymenolepis diminuta Feces, environmental Mouse, Rat 20-00169
K virus (Mouse pneumotropic virus) Feces, environmental, mesenteric lymph nodes Mouse 20-00016
Kilham’s rat virus (KRV) Feces, environmental, mesenteric lymph nodes, spleen Rat 20-00017
Klebsiella oxytoca Feces, environmental Mouse, Rat, Guinea Pig, Hamster 20-00041
Klebsiella pneumoniae Feces, environmental Mouse, Rat, Guinea Pig, Hamster 20-00040
Lactate dehydrogenase-elevating virus (LDEV) Feces, environmental, serum, spleen Mouse 20-00020
Lawsonia intracellularis Feces, environmental Mouse, Guinea Pig, Hamster, Rat, Rabbit 20-00082
Leptospira spp. Feces, environmental Mouse, Rat 20-00455
Lymphocytic choriomeningitis virus (LCMV) Feces, environmental, kidney Mouse, Rat, Guinea Pig, Hamster 20-00018
Minute virus of mice (MVM) Feces, environmental, mesenteric lymph nodes, spleen Mouse 20-00025
Mouse adenovirus 1 (MAV1) Feces, environmental, mesenteric lymph nodes Mouse, Rat 20-00402
Mouse adenovirus 2 (MAV2) Feces, environmental, intestine Mouse, Rat 20-00404
Mouse cytomegalovirus (MCMV) Feces, environmental, spleen, salivary gland Mouse 20-00021
Mouse hepatitis virus (MHV) Feces, environmental, mesenteric lymph nodes Mouse 20-00086
Mouse Kidney Parvovirus (MKPV) Feces, environmental, kidney Mouse 20-00388
Mouse parvovirus (MPV1-5) Feces, environmental, mesenteric lymph nodes, spleen Mouse 20-00001
Mouse rotavirus (EDIM) Feces, environmental Mouse 20-00008
Mouse thymic virus (MTV) Feces, environmental, oral swab, salivary gland Mouse 20-00024
Murine astrovirus 1 (MuAstV1) Feces, environmental Mouse 20-00170
Murine norovirus (MNV) Feces, environmental Mouse 20-00023
Murine polyomavirus Feces, environmental, skin Mouse 20-00026
Mycoplasma pulmonis Feces, environmental, oral swab Mouse, Rat 20-00095
Myxomatosis (MYXO) Feces Rabbit Call
Ornithonyssus spp. Pelt swab, environmental, feces Mouse, Rat 20-00307
Parvovirus mouse (MPV1-5, MVM) Feces, environmenta Mouse 21-00002
Parvoviruses Rat (RPV, RMV, KRV, H-1) Feces, environmenta Rat 21-00003
Pasteurella multocida Feces, environmental, oral swab Rat, Guinea, Hamster, Rabbit, Chinchilla 20-00172
Pinworms (Aspiculuris tetraptera, Syphacia muris, Syphacia obvelata) Feces, environmental Mouse, Rat, Chinchilla 20-00115
Pneumocystis spp. Feces, environmental, oral swab, lung Mouse, Rat 20-00345
Pneumonia virus of mice (PVM) Feces, environmental, oral swab, lung Mouse, Rat 20-00027
Proteus mirabilis Feces, environmental Mouse, Rat, Guinea Pig, Hamster, Rabbit 20-00369
Pseudomonas aeruginosa Feces, environmental Mouse, Rat, Chinchilla 20-00371
Rat coronavirus (RCV)/ Sialodacryoadenitis virus (SDAV) Feces, environmental, oral swab, Harderian gland Rat 20-00029
Rat cytomegalovirus (RCMV) Feces, environmental, oral swab, salivary gland Rat 20-00028
Rat minute virus (RMV) Feces, environmental, mesenteric lymph nodes, spleen Rat 20-00031
Rat parvovirus (RPV) Feces, environmental, mesenteric lymph nodes, spleen Rat 20-00032
Rat polyomavirus 2 (RPyV2) Feces, environmental, oral swab Rat 20-00315
Rat rotavirus (IDIR) Feces, environmental Rat 20-00184
Rat theilovirus (RTV) Feces, environmental, intestine Rat 20-00037
Reovirus type 3 (REO3) Feces, environmental, intestine Mouse, Rat, Guinea Pig, Hamster 20-00030
Rodentibacter heylii / pneumotropicus Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Rabbit, Chinchilla 20-00171
Rodentolepis nana Feces, environmental Mouse, Rat, Chinchilla 20-00163
Salmonella spp. Feces, environmental Mouse, Rat, Guinea Pig, Hamster, Rabbit, Chinchilla 20-00033
Segmented filamentous bacterium Feces, environmental Mouse 20-00144
Sendai virus (SEND) Feces, environmental, oral swab, lung Mouse, Rat, Guinea Pig, Hamster 20-00014
Seoul virus (SEOV) Feces, environmental, kidney Mouse, Rat 20-00495
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV 2) Feces, environmental Mouse 20-00417
Sin Nombre virus (SNV) Feces, environmental, kidney Mouse 20-00394
Spironucleus muris Feces, environmental Mouse, Rat, Hamster 20-00092
Staphylococcus aureus Feces, environmental, oral swab, fur swab/skin swab Mouse, Rat, Chinchilla 20-00034
Staphylococcus xylosus Feces, environmental, oral swab, fur swab/skin swab Mouse, Rat 20-00378
Streptobacillus moniliformis Feces, environmental, oral swab Mouse, Rat, Guinea Pig 20-00035
Streptococcus agalactiae (Group B) Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00410
Streptococcus canis (Group G) Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00489
Streptococcus equi subsp. zooepidemicus (Group C) Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00457
Streptococcus pneumoniae Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00134
Streptococcus pyogenes (Group A) Feces, environmental, oral swab Mouse, Rat, Guinea Pig, Hamster, Chinchilla 20-00493
Syphacia muris (Pinworms) Feces, environmental Mouse, Rat, Chinchilla 20-00115
Theiler’s murine encephalomyelitis virus (TMEV) Feces, environmental Mouse 20-00038
Toolan’s H-1 virus (H-1) Feces, environmental, mesenteric lymph nodes, spleen Rat 20-00010
Treponema paraluiscuniculi Genital swab Rabbit 20-00461
Tritrichomonas muris Feces, environmental Mouse, Rat 20-00154
Yersinia enterocolitica Feces, environmental Chinchilla 20-00165
Yersinia pseudotuberculosis Feces, environmental Chinchilla 20-00136

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